Useful Links Enzyme information database - Salis Lab RBS Calculator - Database for E. coli genome, transcriptional regulation, and metabolic pathways Similar to EcoCyc, but for many other organisms UNAFold (combination of mFold and DINAMelt software): RNA folding and DNA hybridization/melting prediction - Promoter Prediction Software - Kyoto Encyclopedia of Genes and Genomes - RegulonDB, E. coli Transcriptional Network - Standard Registry of Biological Parts - Plasmid Database - Database of useful biological numbers Synthetic Biology Engineering Research Center - Regulation and Transcription Factor Binding Site Database - BIOFAB: International Open Facility Advancing Biotechnology

http:// RNAiFold: RNA inverse folding problem- find RNA sequence using given target secondary structure - Codon Optimizer for prokaryotes -  Gene2Oligo: oligonucleotide design for in vitro gene synthesis -  Rare codon calculator (RaCC) for E. coli - The Coli Genetic Stock Center - IntraRNA- RNA-RNA Interaction calculator - CopraRNA- sRNA Targeting - Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes​ - List of Tools for Identfiying Repeats, Secondary Structure, and Melting Temperature for RNA & DNA